The Ultimate Low-Carb Dessert
The first time I made keto cheesecake cupcakes, I was skeptical. Could something so delicious actually be low-carb? I had tried other keto desserts before, but they often tasted artificial or had a weird texture. Then, one evening, craving something sweet but determined to stick to my diet, I gave it a shot.
The moment I took a bite—creamy, rich, and just the right amount of sweetness—I knew I had found a winner. These little treats became a staple in my kitchen, and today, I’m sharing the perfect keto cheesecake cupcakes recipe with you.
If you’re looking for a guilt-free dessert that’s easy to make, keto-friendly, and absolutely delicious, then keep reading. Let’s dive into why these low-carb cheesecake cupcakes are the ultimate dessert for anyone on a ketogenic diet!
Quick and Easy to Make
You don’t need to be a professional baker to whip up these beauties. With just a few simple ingredients and 30 minutes, you’ll have a batch ready to enjoy.
“The best keto recipes are the ones that don’t feel like you’re sacrificing anything at all.”
Let’s jump into what you’ll need to make the best keto cheesecake cupcakes at home.
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Keto Cheesecake Cupcakes
- Total Time: 30 minutes
- Yield: 6 cupcakes
- Diet: Gluten Free
Description
These keto cheesecake cupcakes are the perfect low-carb, sugar-free dessert for any occasion. Creamy, rich, and easy to make, they offer all the indulgence of a classic cheesecake without the carbs. Perfect for those on a ketogenic diet, these cupcakes are delicious and satisfying!
Ingredients
For the Crust:
- ½ cup almond flour
- 2 tbsp butter, melted
- 1 tbsp powdered erythritol
For the Cheesecake Filling:
- 8 oz (225g) cream cheese, softened
- ⅓ cup powdered erythritol
- 2 large eggs
- 1 tsp vanilla extract
- 1 tbsp lemon juice
- 2 tbsp sour cream
Optional Toppings:
- Sugar-free chocolate drizzle
- Fresh berries (raspberries, blackberries, or strawberries)
- Homemade whipped cream
Instructions
Step 1: Preheat & Prepare
- Preheat the oven to 325°F (163°C).
- Line a muffin tin with 6 cupcake liners.
Step 2: Make the Crust
- In a mixing bowl, combine almond flour, melted butter, and erythritol.
- Press the mixture evenly into the bottom of each cupcake liner.
- Bake for 5 minutes, then let cool while preparing the filling.
Step 3: Make the Cheesecake Batter
- In a large bowl, beat the cream cheese until smooth.
- Add erythritol, eggs, vanilla, lemon juice, and sour cream, mixing until combined.
Step 4: Bake
- Spoon the cheesecake batter evenly over the crusts.
- Bake for 18-20 minutes, until the edges are set but the center is slightly jiggly.
Step 5: Cool & Chill
- Let the cupcakes cool at room temperature for 15 minutes.
- Transfer to the fridge and chill for at least 2 hours before serving.
Step 6: Add Toppings & Enjoy
- Drizzle with keto-friendly chocolate.
- Top with fresh berries or whipped cream.
- Enjoy your delicious low-carb cheesecake cupcakes!
Notes
- Sweetener Options: Swap erythritol for monk fruit sweetener or allulose.
- Dairy-Free Option: Use coconut cream instead of sour cream and dairy-free cream cheese.
- Make Ahead: These cupcakes store well in the fridge for up to 5 days and freeze for 3 months.
- Prep Time: 10 minutes
- Cook Time: 20 minutes
- Category: Dessert
- Method: Baking
- Cuisine: American
Nutrition
- Serving Size: 1 Keto Cheesecake Cupcake Total Servings: 6 cupcakes
- Calories: 180 kcal
- Sugar: 1g
- Sodium: 140mg
- Fat: 16g
- Saturated Fat: 8g
- Unsaturated Fat: 6g
- Trans Fat: 0g
- Carbohydrates: 4g
- Fiber: 1g
- Protein: 5g
- Cholesterol: 55mg
Keywords: Keto cheesecake cupcakes, low-carb cheesecake, sugar-free cupcakes, keto dessert recipe
Essential Ingredients for Keto Cheesecake Cupcakes

Ingredient | Quantity | Why It’s Used |
---|---|---|
Cream cheese | 8 oz (225g) | The base for that creamy cheesecake texture |
Eggs | 2 large | Helps bind the batter together |
Almond flour | ½ cup | Low-carb crust alternative |
Butter | 2 tbsp, melted | Adds richness to the crust |
Powdered erythritol | ⅓ cup | Sugar-free sweetener |
Vanilla extract | 1 tsp | Enhances the flavor |
Lemon juice | 1 tbsp | Adds a subtle tangy touch |
Sour cream | 2 tbsp | Makes the cheesecake extra creamy |
“The key to great keto baking is using the right ingredients that mimic the taste and texture of traditional desserts.”
Step-by-Step Recipe: How to Make Keto Cheesecake Cupcakes
Preparation and Equipment Needed
First, gather your tools:
- A muffin tin with cupcake liners
- A mixing bowl
- A hand mixer or stand mixer
- A spoon or spatula
Step 1: Making the Keto-Friendly Crust
- Preheat your oven to 325°F (163°C).
- Mix almond flour, melted butter, and 1 tbsp powdered erythritol in a bowl until it forms a dough.
- Press the mixture into the bottoms of the cupcake liners.
- Bake for 5 minutes, then let them cool while you prepare the filling.
“The crust is like the foundation of a house—get it right, and everything else will fall into place perfectly.”
Step 2: Preparing the Cheesecake Filling
- In a large mixing bowl, beat the cream cheese until smooth.
- Add powdered erythritol, eggs, vanilla extract, lemon juice, and sour cream.
- Mix until creamy and lump-free.
Step 3: Baking and Cooling for the Best Texture
- Pour the cheesecake batter evenly over the crusts in the cupcake liners.
- Bake for 18-20 minutes or until the edges are set but the center is slightly jiggly.
- Let them cool at room temperature for 15 minutes, then chill in the fridge for at least 2 hours.
“Patience is key—these keto cheesecake cupcakes taste best when they’re fully chilled.”
Step 4: Toppings and Flavor Variations
Now that you have your perfect keto cheesecake cupcakes, it’s time to get creative with toppings!
- Keto chocolate drizzle (sugar-free melted chocolate)
- Fresh berries (low-carb options like raspberries or blackberries)
- Whipped cream (unsweetened heavy cream whipped to perfection)
Why Keto Cheesecake Cupcakes Are the Perfect Dessert
Low-Carb and Sugar-Free Benefits
When you’re on a keto diet, sugar is the enemy. Regular cheesecakes and cupcakes are loaded with carbs, thanks to sugar and flour. But these keto cheesecake cupcakes? They’re made with zero refined sugar and low-carb ingredients, keeping your blood sugar stable while satisfying your sweet tooth.
Perfect for Weight Loss and Ketogenic Lifestyles
Most desserts will kick you out of ketosis, but these cupcakes? Nope! Each bite is rich in healthy fats and low in carbs, making them a perfect keto dessert that won’t spike your insulin.
Want even more variety? Let’s check out some delicious keto cheesecake cupcake variations!
Delicious Variations of Keto Cheesecake Cupcakes
Chocolate Swirl Keto Cheesecake Cupcakes
- Melt ¼ cup of sugar-free chocolate chips and swirl it into the batter before baking.
Lemon Zest and Blueberry Keto Cheesecake Cupcakes
- Add 1 tsp of lemon zest and a few fresh blueberries for a fruity twist.
Peanut Butter Keto Cheesecake Cupcakes
- Swirl in sugar-free peanut butter for a rich, nutty flavor.
“A great recipe is like a blank canvas—customize it to fit your cravings!”
Check out these other easy recipes:
➡️Cinnamon Roll Protein Crepes
➡️Dirt Cake Recipe
➡️Heavenly Hash Dessert
Common Problems and Solutions When Making Keto Cheesecake Cupcakes
Even the best bakers run into issues sometimes! Here are some common problems when making keto cheesecake cupcakes and how to fix them.
Why Did My Cheesecake Cupcakes Crack?
One of the most frustrating things about baking cheesecakes—big or small—is cracking. Here’s why it happens:
- Overbaking – When cheesecakes bake too long, they dry out and crack.
- Rapid cooling – A sudden temperature drop can cause cracks.
- Too much air in the batter – Overmixing adds too much air, which expands during baking and deflates when cooled.
How to Fix It:
- Bake just until the edges are set but the center is slightly jiggly.
- Let the cupcakes cool gradually by turning off the oven and leaving them inside with the door slightly open.
- Mix the batter on low speed to avoid air bubbles.
“Patience is key—rushing the process is the fastest way to cracked cheesecakes!”
How to Prevent a Soggy Crust
A soggy crust ruins the perfect cheesecake texture. Here’s why it happens:
- Not pre-baking the crust – This step helps crisp up the almond flour base.
- Excess moisture in ingredients – Too much butter or wet fillings can make the crust soggy.
How to Fix It:
- Always pre-bake the crust for 5 minutes before adding the filling.
- If using frozen berries, drain any excess liquid before adding them.
Getting the Perfect Texture Without Overbaking
Ever had a cheesecake that was too firm and dry? That’s a sign of overbaking. The key to perfect keto cheesecake cupcakes is baking just right.
How to Fix It:
- Use the jiggle test – The center should still wobble slightly when you take them out.
- Don’t open the oven too early – Sudden temperature changes can ruin the texture.
“Think of cheesecake like a custard—it needs a gentle touch and slow baking to stay creamy.”
Tips for Storing and Freezing Keto Cheesecake Cupcakes
One of the best things about keto cheesecake cupcakes is that they store beautifully! Here’s how to keep them fresh:
How to Store in the Refrigerator
- Place cupcakes in an airtight container.
- Store in the fridge for up to 5 days.
Freezing Tips for Long-Term Storage
- Wrap each cupcake individually in plastic wrap.
- Store in a ziplock bag or airtight container.
- Freeze for up to 3 months.
- To eat, thaw in the fridge overnight.
“Make a big batch and freeze some for later—future you will thank you!”
Best Pairings for Keto Cheesecake Cupcakes
Wondering what to serve with your keto cheesecake cupcakes? Here are some perfect low-carb pairings:
Keto Coffee and Tea Pairings
- Bulletproof coffee – A creamy, buttery coffee pairs beautifully with cheesecake.
- Matcha latte – The slight bitterness of matcha balances the sweetness.
Low-Carb Whipped Cream and Sauces
- Homemade whipped cream – Just heavy cream + keto sweetener = perfection.
- Sugar-free chocolate drizzle – Melt some keto chocolate chips and drizzle over the top.
“Pairing the right drink or topping with your dessert takes it from good to gourmet.”
Frequently Asked Questions (FAQs)
Can I Make These Without a Crust?
Yes! Just skip the crust step and pour the batter directly into the cupcake liners.
What’s the Best Sweetener for Keto Cheesecake?
Erythritol, monk fruit, or allulose work best for a sugar-free sweet taste.
How Long Do Keto Cheesecake Cupcakes Last?
They last 5 days in the fridge or 3 months in the freezer.
Can I Use Dairy-Free Alternatives?
Yes! Use coconut cream instead of heavy cream and dairy-free cream cheese for a non-dairy version.
Conclusion
Keto cheesecake cupcakes are the perfect low-carb dessert—rich, creamy, and easy to make. Whether you enjoy them plain, topped with sugar-free chocolate, or mixed with flavors like peanut butter or berries, they’ll satisfy your sweet tooth without the guilt.
So what are you waiting for? Grab your ingredients, preheat your oven, and start baking these delicious keto-friendly treats today!